ACR Convergence 2025| Video: Rheum for Everyone, Episode 26—Ableism

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The Microbiome’s Impact on Rheumatoid Arthritis & Drug Response

Ruth Jessen Hickman, MD  |  November 7, 2025

Dr. Rooney shared work from his lab on individuals at risk of full-blown RA due to their ACPA positivity or arthralgia symptoms (without clinical synovitis). These individuals displayed a distinct microbiome, with decreased diversity of microbiome species. This was true whether or not they eventually progressed to RA as defined by current clinical guidelines. For those who did progress, the gut environment became more unstable in the 10 months preceding full-blown RA, with increased numbers of some species, including certain strains of Prevotellaccae bacteria.12-13

Such work might eventually lead to interventions in the microbiome to help prevent or delay RA onset in at-risk groups, such as specific dietary changes, prebiotics, probiotics or even fecal microbiota transplantation.14

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Dr. Rooney also discussed a qualitative study that explored attitudes about preventative interventions in people at risk for RA. At present, established modifiable risk factors are somewhat scarce, primarily focused on increasing physical activity, reducing obesity and encouraging smoking cessation.15

“This gives a potential for a new modifiable risk factor, and it’s been met with great enthusiasm,” said Dr. Rooney.

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Ruth Jessen Hickman, MD, photoRuth Jessen Hickman, MD, a graduate of the Indiana University School of Medicine, is a medical and science writer in Bloomington, Ind.

References

  1. Hou K, Wu ZX, Chen XY, et al. Microbiota in health and diseases. Signal Transduct Target Ther. 2022 Apr 23;7(1):135. 
  2. De Luca F, Shoenfeld Y. The microbiome in autoimmune diseases. Clin Exp Immunol. 2019 Jan;195(1):74–85. 
  3. Rooney CM, Mankia K, Emery P. The role of the microbiome in driving RA-related autoimmunity. Front Cell Dev Biol. 2020 Sep 29;8:538130.
  4. Zhernakova A, Kurilshikov A, Bonder MJ, et al. Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity. Science. 2016 Apr 29;352(6285):565–569. 
  5. Artacho A, Isaac S, Nayak R, et al. The pretreatment gut microbiome is associated with lack of response to methotrexate in new-onset rheumatoid arthritis. Arthritis Rheumatol. 2021 Jun;73(6):931–942. 
  6. Nayak RR, Alexander M, Deshpande I, et al. Methotrexate impacts conserved pathways in diverse human gut bacteria leading to decreased host immune activation. Cell Host Microbe. 2021 Mar 10;29(3):362-377.e11.
  7. Nayak RR, Orellana DA. The impact of the human gut microbiome on the treatment of autoimmune disease. Immunol Rev. 2024 Aug;325(1):107–130. 
  8. Scher JU, Nayak RR, Ubeda C, et al. Pharmacomicrobiomics in inflammatory arthritis: Gut microbiome as modulator of therapeutic response. Nat Rev Rheumatol. 2020 May;16(5):282–292.
  9. Detert J, Bastian H, Listing J, et al. Induction therapy with adalimumab plus methotrexate for 24 weeks followed by methotrexate monotherapy up to week 48 versus methotrexate therapy alone for DMARD-naive patients with early rheumatoid arthritis: HIT HARD, an investigator-initiated study. Ann Rheum Dis 2013;72:844–850.
  10. Fraenkel L, Bathon JM, England BR, et al. 2021 American College of Rheumatology guideline for the treatment of rheumatoid arthritis. Arthritis Rheumatol. 2021 Jul;73(7):1108–1123.
  11. Hemgren C, Martinsson K, Rooney C, et al. Elevated serum levels of zonulin family peptides in anticitrullinated protein antibody-positive at-risk individuals without arthritis. J Rheumatol. 2024 Feb 1;51(2):134–138.
  12. Rooney CM, Mankia K, Mitra S, et al. Perturbations of the gut microbiome in anti-CCP positive individuals at risk of developing rheumatoid arthritis. Rheumatology (Oxford). 2021 Jul 1;60(7):3380–3387. 
  13. Rooney CM, Jeffery IB, Mankia K, et al. Dynamics of the gut microbiome in individuals at risk of rheumatoid arthritis: A cross-sectional and longitudinal observational study. Ann Rheum Dis. 2024 Nov 8:ard-2024-226362. 
  14. Tsetseri MN, Silman AJ, Keene DJ, et al. The role of the microbiome in rheumatoid arthritis: A review. Rheumatol Adv Pract. 2023 Apr 3;7(2):rkad034. 
  15. Chapman LS, Siddle HJ, Serban S, et al. ‘What is my risk really?’: A qualitative exploration of preventive interventions among individuals at risk of rheumatoid arthritis. Rheumatol Adv Pract. 2024 Feb 29;8(2):rkae023.

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Filed under:ACR ConvergenceConditionsResearch RheumRheumatoid Arthritis Tagged with:ACR Convergence 2025autoimmunitygut microbiomeMethotrexateMicrobiomePathogenesisPharmacomicrobiomics

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